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1 to 4 of 4 Results
Inter-Nucleosomal Potentials from Nucleosomal Positioning Data [Research Data]
Mar 29, 2022
Li, Kunhe; Oiwa, Nestor N.; Mishra, Sujeet K.; Heermann, Dieter W., 2022, "Inter-Nucleosomal Potentials from Nucleosomal Positioning Data [Research Data]", https://doi.org/10.11588/data/H3KPEU, heiDATA, V1
This dataset accompanies the paper "Inter-Nucleosomal Potentials from Nucleosomal Positioning Data." In this paper, a systematic method to develop inter-nucleosomal potentials between nucleosomes along a chromosome is focused. To this purpose, a modified Lennard-Jones potential i...
Prediction and Comparative Analysis of CTCF Binding Sites based on a First Principle Approach [Research Data]
Mar 7, 2022
Li, Kunhe; Oiwa, Nestor Norio; Cordeiro, Claudette E.; Heermann, Dieter W., 2022, "Prediction and Comparative Analysis of CTCF Binding Sites based on a First Principle Approach [Research Data]", https://doi.org/10.11588/data/RDISCE, heiDATA, V1
The file contains the CTCF-DNA binding sites for complete genome of Homo sapiens (human), Mus musculus (mouse), Sus scrofa (pig), Capra hircus (goat), Aedes aegypti (dengue and yellow fever mosquito) and Drosophila melanogaster (fruit fly) using electronic nucleotide alignment. T...
Bekvaem: Integrative Data Exploration of Genomic Data
Nov 21, 2019
Hofmann, Andreas; Müggenburg, Jan; Heermann, Dieter W., 2019, "Bekvaem: Integrative Data Exploration of Genomic Data", https://doi.org/10.11588/data/KGYOS6, heiDATA, V1
Using modern open-source libraries for web-based visualizations and data-processing, Bekvaem, a generic framework for the creation of data exploration software is introduced. Providing a high-level interface to fast low-level routines and employing open formats for the data stora...
Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction [Dataset]
Oct 16, 2014
Jerabek, Hansjörg; Tark-Dame, Mariliis; Manders, Erik M. M.; Heermann, Dieter W.; van Driel, Roel, 2014, "Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction [Dataset]", https://doi.org/10.11588/data/10028, heiDATA, V4
Simulations using an advanced version of the Dynamic Loop model were performed to investigate the mechanisms responsible for the experimental finding that the reduction of the chromatin looping proteins CTCF and cohesin leads to chromatin compaction.
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