KnopLab

Data publications of the KnopLab.

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1 to 10 of 65 Results

Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase [Dataset] Apr 16, 2021 Kong, Ka-Yiu Edwin; Fischer, Bernd; Meurer, Matthias; Kats, Ilia; Li, Zhaoyan; Rühle, Frank; Barry, Joseph D.; Kirrmaier, Daniel; Chevyreva, Veronika; San Luis, Bryan-Joseph; Costanzo, Michael; Huber, Wolfgang; Andrews, Brenda J.; Boone, Charles; Knop, Michael; Khmelinskii, Anton, 2021, "Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase [Dataset]", https://doi.org/10.11588/data/Q3TSLH, heiDATA, V1 Data accompanying the paper "Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase".
README.txt Apr 16, 2021 - Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase [Dataset] Plain Text - 1.4 KB - MD5: 9e4a9df325ca2d4169f1a0bdb5e80122 Documentation
yUPSprofiling_0.1.6.tar.gz Apr 16, 2021 - Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase [Dataset] Gzip Archive - 168.4 MB - MD5: 9caef062179004c47e0e539b325d405d Code
yUPSprofiling.pdf Apr 16, 2021 - Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase [Dataset] Adobe PDF - 2.5 MB - MD5: 88bc469ad8e78fe0cb2525aafd15b9da Documentation
yUPSprofiling_v0.1.6_results_vignette.zip Apr 16, 2021 - Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase [Dataset] ZIP Archive - 2.3 GB - MD5: a14e3f7be513f747fd7d2ce76221f54c Data
Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast [Dataset] May 28, 2019 Buchmuller, Benjamin C; Herbst, Konrad; Meurer, Matthias; Kirrmaier, Daniel; Sass, Ehud; Levy, Emmanuel D; Knop, Michael, 2019, "Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast [Dataset]", https://doi.org/10.11588/data/L45TRX, heiDATA, V2 Data accompanying the paper "Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast" by Buchmuller and Herbst et al, 2019, Nat Communications. This contains raw NGS data for all genotyping analysis in the publication as well as the source code of the...
CASTLING_rawdata_201805-illumina_poolAB1B2_PCR_RCA.zip May 28, 2019 - Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast [Dataset] ZIP Archive - 400.6 MB - MD5: 3dea41c60cc5128ff329f060016efafb multiplexed TruSeq amplicon sequencing of PCR and RCA for libraries 1a, 1b, 2a, 2b, 3a, 3b, 4a, 4b (only R2 was used for analysis)
README-CASTLING_NGS_rawdata.txt May 28, 2019 - Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast [Dataset] Plain Text - 1.7 KB - MD5: 0446e5ba5ca91f2f210532504522b0c2 Documentation description of raw sequencing data (individual .zip files)
CASTLING_rawdata_201704-illumina_poolC_PCR.zip May 16, 2019 - Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast [Dataset] ZIP Archive - 1.5 GB - MD5: f592aecd0da42ac255c68b265f7d7d23 TruSeq amplicon sequencing of 1x sampled PCR
CASTLING_rawdata_201706-illumina_poolC_PCR.zip May 16, 2019 - Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast [Dataset] ZIP Archive - 4.4 GB - MD5: 8774a245382e5e5f581caa50710e5cfa TruSeq amplicon sequencing of 10x sampled PCR

Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase [Dataset]

Apr 16, 2021

Kong, Ka-Yiu Edwin; Fischer, Bernd; Meurer, Matthias; Kats, Ilia; Li, Zhaoyan; Rühle, Frank; Barry, Joseph D.; Kirrmaier, Daniel; Chevyreva, Veronika; San Luis, Bryan-Joseph; Costanzo, Michael; Huber, Wolfgang; Andrews, Brenda J.; Boone, Charles; Knop, Michael; Khmelinskii, Anton, 2021, "Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase [Dataset]", https://doi.org/10.11588/data/Q3TSLH, heiDATA, V1

Data accompanying the paper "Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase".

README.txt

Apr 16, 2021 - Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase [Dataset]

Plain Text - 1.4 KB -

Documentation

yUPSprofiling_0.1.6.tar.gz

Apr 16, 2021 - Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase [Dataset]

Gzip Archive - 168.4 MB -

Code

yUPSprofiling.pdf

Apr 16, 2021 - Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase [Dataset]

Adobe PDF - 2.5 MB -

Documentation

yUPSprofiling_v0.1.6_results_vignette.zip

Apr 16, 2021 - Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase [Dataset]

ZIP Archive - 2.3 GB -

Data

Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast [Dataset]

May 28, 2019

Buchmuller, Benjamin C; Herbst, Konrad; Meurer, Matthias; Kirrmaier, Daniel; Sass, Ehud; Levy, Emmanuel D; Knop, Michael, 2019, "Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast [Dataset]", https://doi.org/10.11588/data/L45TRX, heiDATA, V2

Data accompanying the paper "Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast" by Buchmuller and Herbst et al, 2019, Nat Communications. This contains raw NGS data for all genotyping analysis in the publication as well as the source code of the...

CASTLING_rawdata_201805-illumina_poolAB1B2_PCR_RCA.zip

May 28, 2019 - Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast [Dataset]

ZIP Archive - 400.6 MB -

multiplexed TruSeq amplicon sequencing of PCR and RCA for libraries 1a, 1b, 2a, 2b, 3a, 3b, 4a, 4b (only R2 was used for analysis)

README-CASTLING_NGS_rawdata.txt

May 28, 2019 - Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast [Dataset]

Plain Text - 1.7 KB -

Documentation

description of raw sequencing data (individual .zip files)

CASTLING_rawdata_201704-illumina_poolC_PCR.zip

May 16, 2019 - Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast [Dataset]

ZIP Archive - 1.5 GB -

TruSeq amplicon sequencing of 1x sampled PCR

CASTLING_rawdata_201706-illumina_poolC_PCR.zip

May 16, 2019 - Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast [Dataset]

ZIP Archive - 4.4 GB -

TruSeq amplicon sequencing of 10x sampled PCR

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