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Data publications of the KnopLab.

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11 to 20 of 60 Results

CASTLING_rawdata_201709-minion_poolC_libs_mNeonGreen_phenobins.zip May 16, 2019 - Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast [Dataset] ZIP Archive - 318.4 MB - MD5: 74bf918f119e661d9e219b8934d9aa8f multiplexed Anchor-Seq (CDS-tag junction) of FACS binning (2nd FACS) of FACS enriched (1st FACS) lib #1.1
CASTLING_rawdata_201806-illumina_poolAB1B2_libs.zip May 16, 2019 - Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast [Dataset] ZIP Archive - 11.2 GB - MD5: 4871aad2440a255205b5001efe1951d3 multiplexed Anchor-Seq (tag-3'UTR junction) of libraries 1a, 1b, 2a, 2b, 3a, 3b, 4a, 4b
CASTLING_rawdata_201806-illumina_poolD_libs.zip May 16, 2019 - Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast [Dataset] ZIP Archive - 16.2 GB - MD5: fd4ca043907e92b44840374ca7e9ba6e multiplexed Anchor-Seq (tag-3'UTR junction) of libraries LibA, LibB, LibC (in contrast to LibA and LibB, LibC was sequenced in the same run as libraries 1a-4b)
castR-1.0.zip May 16, 2019 - Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast [Dataset] ZIP Archive - 21.8 KB - MD5: a9c5aad3287a8addab810ca1676d2573 Sourcecode Designsoftware of Pooled Genome-Wide Tag Libraries v1.0 (also https://github.com/knoplab/castR/tree/v1.0)
Supplementary File S1_beads training set.tar.gz Dec 11, 2018 - 3D Focusing in Simple Microfluidic Devices for Continuous-flow Single-cell Imaging [data set] Gzip Archive - 25.4 MB - MD5: 64f67d40ee3312596b851945583fab76 Training images containing stationary beads for neural network training.
Supplementary File S2_beads.tif Dec 11, 2018 - 3D Focusing in Simple Microfluidic Devices for Continuous-flow Single-cell Imaging [data set] TIFF Image - 70.3 MB - MD5: 1ba47b5d5049e158768c755add79eb99 A stack of frames containing beads extracted from an imaging flow cytometry run.
Supplementary File S3_budding yeast.tif Dec 11, 2018 - 3D Focusing in Simple Microfluidic Devices for Continuous-flow Single-cell Imaging [data set] TIFF Image - 74.2 MB - MD5: 910144aefc900a45bdf58d2e711d15d8 A stack of frames containing budding yeast cells extracted from an imaging flow cytometry run.
N-terminome_rep1.json Mar 5, 2018 - Mapping degradation signals and pathways in a eukaryotic N-terminome [data set] JSON - 507.5 KB - MD5: b0916e5a056c856b54e317f4c9a5cd20 N-terminome library replicate 1 MPS description file
N-terminome_rep1_run1_1_sequence.txt.gz Mar 5, 2018 - Mapping degradation signals and pathways in a eukaryotic N-terminome [data set] Gzip Archive - 1.5 GB - MD5: d2096605e24299664b9475f520c42a03 N-terminome library replicate 1, MiSeq run 1, forward read
N-terminome_rep1_run1_2_sequence.txt.gz Mar 5, 2018 - Mapping degradation signals and pathways in a eukaryotic N-terminome [data set] Gzip Archive - 1.6 GB - MD5: 9d9ee5ae87ed901de6733df32ac5c50a N-terminome library replicate 1, MiSeq run 1, reverse read

CASTLING_rawdata_201709-minion_poolC_libs_mNeonGreen_phenobins.zip

May 16, 2019 - Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast [Dataset]

ZIP Archive - 318.4 MB -

multiplexed Anchor-Seq (CDS-tag junction) of FACS binning (2nd FACS) of FACS enriched (1st FACS) lib #1.1

CASTLING_rawdata_201806-illumina_poolAB1B2_libs.zip

May 16, 2019 - Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast [Dataset]

ZIP Archive - 11.2 GB -

multiplexed Anchor-Seq (tag-3'UTR junction) of libraries 1a, 1b, 2a, 2b, 3a, 3b, 4a, 4b

CASTLING_rawdata_201806-illumina_poolD_libs.zip

May 16, 2019 - Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast [Dataset]

ZIP Archive - 16.2 GB -

multiplexed Anchor-Seq (tag-3'UTR junction) of libraries LibA, LibB, LibC (in contrast to LibA and LibB, LibC was sequenced in the same run as libraries 1a-4b)

castR-1.0.zip

May 16, 2019 - Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast [Dataset]

ZIP Archive - 21.8 KB -

Sourcecode Designsoftware of Pooled Genome-Wide Tag Libraries v1.0 (also https://github.com/knoplab/castR/tree/v1.0)

Supplementary File S1_beads training set.tar.gz

Dec 11, 2018 - 3D Focusing in Simple Microfluidic Devices for Continuous-flow Single-cell Imaging [data set]

Gzip Archive - 25.4 MB -

Training images containing stationary beads for neural network training.

Supplementary File S2_beads.tif

Dec 11, 2018 - 3D Focusing in Simple Microfluidic Devices for Continuous-flow Single-cell Imaging [data set]

TIFF Image - 70.3 MB -

A stack of frames containing beads extracted from an imaging flow cytometry run.

Supplementary File S3_budding yeast.tif

Dec 11, 2018 - 3D Focusing in Simple Microfluidic Devices for Continuous-flow Single-cell Imaging [data set]

TIFF Image - 74.2 MB -

A stack of frames containing budding yeast cells extracted from an imaging flow cytometry run.

N-terminome_rep1.json

Mar 5, 2018 - Mapping degradation signals and pathways in a eukaryotic N-terminome [data set]

JSON - 507.5 KB -

N-terminome library replicate 1 MPS description file

N-terminome_rep1_run1_1_sequence.txt.gz

Mar 5, 2018 - Mapping degradation signals and pathways in a eukaryotic N-terminome [data set]

Gzip Archive - 1.5 GB -

N-terminome library replicate 1, MiSeq run 1, forward read

N-terminome_rep1_run1_2_sequence.txt.gz

Mar 5, 2018 - Mapping degradation signals and pathways in a eukaryotic N-terminome [data set]

Gzip Archive - 1.6 GB -

N-terminome library replicate 1, MiSeq run 1, reverse read

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