Functional Neuroanatomy

Data from the Department of Functional Neuroanatomy at the Institute for Anatomy and Cell Biology of Heidelberg University.

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1 to 10 of 61 Results

Digital Appendix: Structural cerebrocortical changes in ageing and chronic neuropathic pain - a mouse study correlating magnetic resonance imaging and in vivo two-photon microscopy Sep 29, 2023 Asan, Livia, 2023, "Digital Appendix: Structural cerebrocortical changes in ageing and chronic neuropathic pain - a mouse study correlating magnetic resonance imaging and in vivo two-photon microscopy", https://doi.org/10.11588/data/TPZWAE, heiDATA, V1, UNF:6:E5Th/vUc0jX9a3OPVhNHfQ== [fileUNF] This is the digital appendix to the dissertation by Livia Asan, titled "Structural cerebrocortical changes in ageing and chronic neuropathic pain - a mouse study correlating magnetic resonance imaging and in vivo two-photon microscopy", at the Faculty of Medicine, Heidelberg, Rup...
Digital Appendix 1 - Nucleus measurement from automated detection and segmentation.zip Sep 29, 2023 - Digital Appendix: Structural cerebrocortical changes in ageing and chronic neuropathic pain - a mouse study correlating magnetic resonance imaging and in vivo two-photon microscopy ZIP Archive - 425.7 MB - MD5: c11990d6fd82192a5295217bbb1e1094 This archive includes separate tables for each 2PLSM image stack from all study mice on all studied timepoints
Digital Appendix 2 - List of excluded data with reason for exclusions.tab Sep 29, 2023 - Digital Appendix: Structural cerebrocortical changes in ageing and chronic neuropathic pain - a mouse study correlating magnetic resonance imaging and in vivo two-photon microscopy Tabular Data - 3.4 KB - 6 Variables, 75 Observations - UNF:6:E5Th/vUc0jX9a3OPVhNHfQ==
Digital Appendix 3 - Video visualizing the automated detection and segmentation output.mp4 Sep 29, 2023 - Digital Appendix: Structural cerebrocortical changes in ageing and chronic neuropathic pain - a mouse study correlating magnetic resonance imaging and in vivo two-photon microscopy MPEG-4 Video - 60.5 MB - MD5: 4a87045b959a4142496a090b57bb8dcc Video created by Dr. Carlo A. Beretta, provided with his kind permission.
Digital Appendix 4 - Analysis script.zip Sep 29, 2023 - Digital Appendix: Structural cerebrocortical changes in ageing and chronic neuropathic pain - a mouse study correlating magnetic resonance imaging and in vivo two-photon microscopy ZIP Archive - 674.3 KB - MD5: e98ec393743e87da1a5fb14ca6b8a206
Digital Appendix 5 - Input data for analysis script.zip Sep 29, 2023 - Digital Appendix: Structural cerebrocortical changes in ageing and chronic neuropathic pain - a mouse study correlating magnetic resonance imaging and in vivo two-photon microscopy ZIP Archive - 338.6 KB - MD5: 81c7aa462b93da22571ef94ecfd43fce
Digital Appendix 6 - MATLAB code for automated image analysis.zip Sep 29, 2023 - Digital Appendix: Structural cerebrocortical changes in ageing and chronic neuropathic pain - a mouse study correlating magnetic resonance imaging and in vivo two-photon microscopy ZIP Archive - 91.2 KB - MD5: e4c16bf3659c1bc54441908a779d0b82 Code
Accurate classification of major brain cell types using in vivo imaging and neural network processing Sep 18, 2023 Johannes Knabbe, 2023, "Accurate classification of major brain cell types using in vivo imaging and neural network processing", https://doi.org/10.11588/data/L3PITA, heiDATA, V1, UNF:6:j36lvBMAVhENUbq1px2P/Q== [fileUNF] This dataset accompanies the article of the same title in the journal Plos Biology. It includes a) Ground truth datasets for the training of the StarDist neuronal network for nucleus segmentation (StardistTraining.tar.gz) b) The trained Stardist nucleus segmentation model (Stardi...
CelltypeClassificationExcInhNeurons.tar.gz Sep 18, 2023 - Accurate classification of major brain cell types using in vivo imaging and neural network processing Gzip Archive - 29.7 GB - MD5: 035e2486a24db6861eed153177632154 Raw and segmented data for training of the cell type classification of inhibitory and excitatory neurons
CelltypeClassification.tar.gz Sep 18, 2023 - Accurate classification of major brain cell types using in vivo imaging and neural network processing Gzip Archive - 74.1 GB - MD5: f2527438cbf5d761725af2f1bbb104b1 Raw and segmented data for training of the cell type classification

Digital Appendix: Structural cerebrocortical changes in ageing and chronic neuropathic pain - a mouse study correlating magnetic resonance imaging and in vivo two-photon microscopy

Sep 29, 2023

Asan, Livia, 2023, "Digital Appendix: Structural cerebrocortical changes in ageing and chronic neuropathic pain - a mouse study correlating magnetic resonance imaging and in vivo two-photon microscopy", https://doi.org/10.11588/data/TPZWAE, heiDATA, V1, UNF:6:E5Th/vUc0jX9a3OPVhNHfQ== [fileUNF]

This is the digital appendix to the dissertation by Livia Asan, titled "Structural cerebrocortical changes in ageing and chronic neuropathic pain - a mouse study correlating magnetic resonance imaging and in vivo two-photon microscopy", at the Faculty of Medicine, Heidelberg, Rup...

Digital Appendix 1 - Nucleus measurement from automated detection and segmentation.zip

Sep 29, 2023 - Digital Appendix: Structural cerebrocortical changes in ageing and chronic neuropathic pain - a mouse study correlating magnetic resonance imaging and in vivo two-photon microscopy

ZIP Archive - 425.7 MB -

This archive includes separate tables for each 2PLSM image stack from all study mice on all studied timepoints

Digital Appendix 2 - List of excluded data with reason for exclusions.tab

Sep 29, 2023 - Digital Appendix: Structural cerebrocortical changes in ageing and chronic neuropathic pain - a mouse study correlating magnetic resonance imaging and in vivo two-photon microscopy

Tabular Data - 3.4 KB - 6 Variables, 75 Observations -

Digital Appendix 3 - Video visualizing the automated detection and segmentation output.mp4

Sep 29, 2023 - Digital Appendix: Structural cerebrocortical changes in ageing and chronic neuropathic pain - a mouse study correlating magnetic resonance imaging and in vivo two-photon microscopy

MPEG-4 Video - 60.5 MB -

Video created by Dr. Carlo A. Beretta, provided with his kind permission.

Digital Appendix 4 - Analysis script.zip

Sep 29, 2023 - Digital Appendix: Structural cerebrocortical changes in ageing and chronic neuropathic pain - a mouse study correlating magnetic resonance imaging and in vivo two-photon microscopy

ZIP Archive - 674.3 KB -

Digital Appendix 5 - Input data for analysis script.zip

Sep 29, 2023 - Digital Appendix: Structural cerebrocortical changes in ageing and chronic neuropathic pain - a mouse study correlating magnetic resonance imaging and in vivo two-photon microscopy

ZIP Archive - 338.6 KB -

Digital Appendix 6 - MATLAB code for automated image analysis.zip

Sep 29, 2023 - Digital Appendix: Structural cerebrocortical changes in ageing and chronic neuropathic pain - a mouse study correlating magnetic resonance imaging and in vivo two-photon microscopy

ZIP Archive - 91.2 KB -

Code

Accurate classification of major brain cell types using in vivo imaging and neural network processing

Sep 18, 2023

Johannes Knabbe, 2023, "Accurate classification of major brain cell types using in vivo imaging and neural network processing", https://doi.org/10.11588/data/L3PITA, heiDATA, V1, UNF:6:j36lvBMAVhENUbq1px2P/Q== [fileUNF]

This dataset accompanies the article of the same title in the journal Plos Biology. It includes a) Ground truth datasets for the training of the StarDist neuronal network for nucleus segmentation (StardistTraining.tar.gz) b) The trained Stardist nucleus segmentation model (Stardi...

CelltypeClassificationExcInhNeurons.tar.gz

Sep 18, 2023 - Accurate classification of major brain cell types using in vivo imaging and neural network processing

Gzip Archive - 29.7 GB -

Raw and segmented data for training of the cell type classification of inhibitory and excitatory neurons

CelltypeClassification.tar.gz

Sep 18, 2023 - Accurate classification of major brain cell types using in vivo imaging and neural network processing

Gzip Archive - 74.1 GB -

Raw and segmented data for training of the cell type classification

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