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Part 1: Document Description
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Citation |
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Title: |
Image-based screening for stress granule regulators |
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Identification Number: |
doi:10.11588/data/KRPJ9A |
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Distributor: |
heiDATA |
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Date of Distribution: |
2021-01-07 |
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Version: |
1 |
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Bibliographic Citation: |
Eiermann, Nina; Stoecklin, Georg, 2021, "Image-based screening for stress granule regulators", https://doi.org/10.11588/data/KRPJ9A, heiDATA, V1 |
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Citation |
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Title: |
Image-based screening for stress granule regulators |
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Subtitle: |
Macro for the automated detection and quantification of stress granules |
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Identification Number: |
doi:10.11588/data/KRPJ9A |
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Authoring Entity: |
Eiermann, Nina (Universität Heidelberg, Medizinische Fakultät Mannheim) |
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Stoecklin, Georg (Universität Heidelberg, Medizinische Fakultät Mannheim) |
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Producer: |
Department of Biochemistry |
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Date of Production: |
2020 |
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Software used in Production: |
FIJI is just ImageJ |
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Distributor: |
heiDATA |
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Access Authority: |
Georg Stoecklin |
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Holdings Information: |
https://doi.org/10.11588/data/KRPJ9A |
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Study Scope |
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Keywords: |
Medicine, Health and Life Sciences, ImageJ macro, batch analysis, cell segmentation, SG detection and quantification |
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Topic Classification: |
Automated image analysis, image-based screening for SG regulators |
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Abstract: |
The supplied macro provides the opportunity to analyse large-scale image datasets, derived from image-based screening approaches. It can be used as a base for the segmentation of individual cells, referred as regions of interest (ROIs), and the detection and quantification of the stress granule (SG) response within those ROIs. |
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Kind of Data: |
program source code |
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Notes: |
The macro for image analysis was written in "FIJI is just ImageJ" |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Other Study Description Materials |
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Other Reference Note(s) |
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https://imagej.nih.gov/ij/ |
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Label: |
ImageAnalysis_ScreenSGRegulators_IJmacro.ijm |
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Notes: |
application/octet-stream |
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Label: |
ImageAnalysis_ScreenSGRegulators_IJmacro.txt |
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Notes: |
text/plain |