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Part 1: Document Description
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Citation |
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Title: |
Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction [Dataset] |
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Identification Number: |
doi:10.11588/data/10028 |
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Distributor: |
heiDATA |
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Date of Distribution: |
2014-10-15 |
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Version: |
4 |
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Bibliographic Citation: |
Jerabek, Hansjörg; Tark-Dame, Mariliis; Manders, Erik M. M.; Heermann, Dieter W.; van Driel, Roel, 2014, "Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction [Dataset]", https://doi.org/10.11588/data/10028, heiDATA, V4 |
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Citation |
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Title: |
Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction [Dataset] |
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Identification Number: |
doi:10.11588/data/10028 |
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Authoring Entity: |
Jerabek, Hansjörg (Institute for Theoretical Physics) |
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Tark-Dame, Mariliis (Institute for Theoretical Physics) |
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Manders, Erik M. M. (Institute for Theoretical Physics) |
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Heermann, Dieter W. (Institute for Theoretical Physics) |
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van Driel, Roel (Institute for Theoretical Physics) |
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Producer: |
Jerabek, Hansjörg |
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Tark-Dame, Mariliis |
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Manders, Erik M. M. |
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Heermann, Dieter W. |
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van Driel, Roel |
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Date of Production: |
2014-09-01 |
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Distributor: |
heiDATA |
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Distributor: |
HeiDATA: Heidelberg Research Data Repository |
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Access Authority: |
Heermann, Dieter W. |
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Date of Deposit: |
2014-10-14 |
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Holdings Information: |
https://doi.org/10.11588/data/10028 |
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Study Scope |
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Keywords: |
Medicine, Health and Life Sciences, Physics, Polymer, Chromatin, DNA, Chromatin folding, CTCF, Cohesin, Chromatin looping, BFM, Monte-Carlo simulations, Dynamic Loop model |
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Abstract: |
Simulations using an advanced version of the Dynamic Loop model were performed to investigate the mechanisms responsible for the experimental finding that the reduction of the chromatin looping proteins CTCF and cohesin leads to chromatin compaction. |
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Geographic Coverage: |
Germany, Netherlands |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Access Authority: |
Prof. Dr. Dieter W. Heermann, Institute for Theoretical Physics, University of Heidelberg, Philosophenweg 12, 69120 Heidelberg, Germany |
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Other Study Description Materials |
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Related Publications |
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Citation |
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Title: |
Tark-Dame M, Jerabek H, Manders EMM, Heermann DW, van Driel R (2014): Depletion of the Chromatin Looping Proteins CTCF and Cohesin Causes Chromatin Compaction: Insight into Chromatin Folding by Polymer Modelling. PLoS Comput Biol 10(10): e1003877. |
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Identification Number: |
doi:10.1371/journal.pcbi.1003877 |
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Bibliographic Citation: |
Tark-Dame M, Jerabek H, Manders EMM, Heermann DW, van Driel R (2014): Depletion of the Chromatin Looping Proteins CTCF and Cohesin Causes Chromatin Compaction: Insight into Chromatin Folding by Polymer Modelling. PLoS Comput Biol 10(10): e1003877. |
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Control_FISH_20140901.txt |
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text/plain; charset=US-ASCII |
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CTCFkd_FISH_20140901.txt |
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text/plain; charset=US-ASCII |
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CTCF_Rad21kd_FISH_20140901.txt |
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text/plain; charset=US-ASCII |
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globules_7.zip |
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application/zip |
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globules_8.zip |
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application/zip |
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globules_9.zip |
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application/zip |
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Rad21kd_FISH_20140901.txt |
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text/plain; charset=US-ASCII |
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README.txt |
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text/plain; charset=US-ASCII |